Alper Yilmaz

Latest

• Batch Analyis of RNA-Seq Data with Docker in AWS Cloud
• Multifactorial Modelling of MicroRNA Associated Repression and Its Subsequent Effects on Gene Expression in MicroRNA:Target Network
• Prebiotics and Probiotics= Break the ‘Self-Domino Effect’ for obesity Treatment
• Generatıng Lossless Compressıon Of Genome Scale K-Mer Frequency Table As Raster Image
• Identification of Tissue Specific Genes and Assessment of Their Intersection with Differentialy Expressed Genes in Cancer Data to Understand Tumor Heterogeneity in silico
• RIGOROUS IDENTIFICATION OF TISSUE SPECIFIC GENES IN SILICO
• Robust and Rigorous Classification of Tissue Specific Genes
• Survey of Chimeric mRNAs in HIV Infected Patient RNA-SEQ Data
• What is the relationship betwenn cancer DEGs and tissue specific genes
• A combined SVM and Markov model approach for splice site identification
• A novel method for splice sites prediction using sequence component and hidden Markov model
• Prediction of splice site using AdaBoost with a new sequence encoding approach
• Protein engineering insights from metagenomes of diverse bacteria
• Utilization of Multiple Mapped Sequences in Next Generation Sequencing Especially in Chip Seq Experiments
• Molecular basis for the action of a dietary flavonoid revealed by the comprehensive identification of apigenin human targets.
• Unraveling the KNOTTED1 regulatory network in maize meristems.
• A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
• Thriving under stress: selective translation of HIV-1 structural protein mRNA during Vpr-mediated impairment of eIF4E translation activity.
• AGRIS: the Arabidopsis Gene Regulatory Information Server, an update.
• Encyclopedias of DNA Elements for Plant Genomes
• POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.
• Components and mechanisms of regulation of gene expression.
• The word landscape of the non-coding segments of the Arabidopsis thaliana genome.
• Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies
• Discovery of Regulatory Networks in Plants by Linking Promoter and Transcription Factor Databases
• GRASSIUS: a platform for comparative regulatory genomics across the grasses.
• RNA helicase A interacts with divergent lymphotropic retroviruses and promotes translation of human T-cell leukemia virus type 1.
• Coordinate enhancement of transgene transcription and translation in a lentiviral vector.
• Retrovirus Translation Initiation: Issues and Hypotheses Derived from Study of HIV-1