Articles | Assist.Prof.Dr. Alper YILMAZ

Molecular basis for the action of a dietary flavonoid revealed by the comprehensive identification of apigenin human targets.

Flavonoids constitute the largest class of dietary phytochemicals, adding essential health value to our diet, and are emerging as key …

Daniel Arango, Kengo Morohashi, Alper Yilmaz, Kouji Kuramochi, Arti Parihar, Bledi Brahimaj, Erich Grotewold, Andrea I Doseff

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Unraveling the KNOTTED1 regulatory network in maize meristems.

KNOTTED1 (KN1)-like homeobox (KNOX) transcription factors function in plant meristems, self-renewing structures consisting of stem …

Nathalie Bolduc, Alper Yilmaz, Maria Katherine Mejia-Guerra, Kengo Morohashi, Devin O’Connor, Erich Grotewold, Sarah Hake

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A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.

Pericarp Color1 (P1) encodes an R2R3-MYB transcription factor responsible for the accumulation of insecticidal flavones in maize (Zea …

Kengo Morohashi, María Isabel Casas, Maria Lorena Falcone Ferreyra, Lorena Falcone Ferreyra, María Katherine Mejía-Guerra, Lucille Pourcel, Alper Yilmaz, Antje Feller, Bruna Carvalho, Julia Emiliani, Eduardo Rodriguez, Silvina Pellegrinet, Michael McMullen, Paula Casati, Erich Grotewold

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Thriving under stress: selective translation of HIV-1 structural protein mRNA during Vpr-mediated impairment of eIF4E translation activity.

Translation is a regulated process and is pivotal to proper cell growth and homeostasis. All retroviruses rely on the host …

Amit Sharma, Alper Yilmaz, Kim Marsh, Alan Cochrane, Kathleen Boris-Lawrie

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POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.

The purpose of the online resource presented here, POPcorn (Project Portal for corn), is to enhance accessibility of maize genetic and …

Ethalinda K S Cannon, Scott M Birkett, Bremen L Braun, Sateesh Kodavali, Douglas M Jennewein, Alper Yilmaz, Valentin Antonescu, Corina Antonescu, Lisa C Harper, Jack M Gardiner, Mary L Schaeffer, Darwin A Campbell, Carson M Andorf, Destri Andorf, Damon Lisch, Karen E Koch, Donald R McCarty, John Quackenbush, Erich Grotewold, Carol M Lushbough, Taner Z Sen, Carolyn J Lawrence

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Encyclopedias of DNA Elements for Plant Genomes

Jens Lichtenberg, Alper Yilmaz, Kyle Kurz, Xiaoyu Liang, Chase Nelson, Thomas Bitterman, Eric Stockinger, Erich Grotewold, Lonnie R. Welch

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AGRIS: the Arabidopsis Gene Regulatory Information Server, an update.

The Arabidopsis Gene Regulatory Information Server (AGRIS; http://arabidopsis.med.ohio-state.edu/) provides a comprehensive resource …

Alper Yilmaz, Maria Katherine Mejia-Guerra, Kyle Kurz, Xiaoyu Liang, Lonnie Welch, Erich Grotewold

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Genome sequencing and analysis of the model grass Brachypodium distachyon.

Three subfamilies of grasses, the Ehrhartoideae, Panicoideae and Pooideae, provide the bulk of human nutrition and are poised to become …

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Components and mechanisms of regulation of gene expression.

The control of gene expression is a biological process essential to all organisms. This is accomplished through the interaction of …

Alper Yilmaz, Erich Grotewold

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The word landscape of the non-coding segments of the Arabidopsis thaliana genome.

BACKGROUND: Genome sequences can be conceptualized as arrangements of motifs or words. The frequencies and positional distributions of …

Jens Lichtenberg, Alper Yilmaz, Joshua D Welch, Kyle Kurz, Xiaoyu Liang, Frank Drews, Klaus Ecker, Stephen S Lee, Matt Geisler, Erich Grotewold, Lonnie R Welch

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Discovery of Regulatory Networks in Plants by Linking Promoter and Transcription Factor Databases

Alper Yilmaz, Ramana Davuluri, Saranyan Palaniswamy, Erich Grotewold

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Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies

Jens Lichtenberg, Mohit Alam, Thomas Bitterman, Frank Drews, Klaus Ecker, Laura Elnitski, Susan Evans, Matt Geisler, Erich Grotewold, Dazhang Gu, Edwin Jacox, Kyle Kurz, Stephen S. Lee, Xiaoyu Liang, Pooja M. Majmudar, Paul Morris, Chase Nelson, Eric Stockinger, Joshua D. Welch, Sarah Wyatt, Alper Yilmaz, Lonnie R. Welch

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GRASSIUS: a platform for comparative regulatory genomics across the grasses.

Transcription factors (TFs) are major players in gene regulatory networks and interactions between TFs and their target genes furnish …

Alper Yilmaz, Milton Y Nishiyama, Bernardo Garcia Fuentes, Glaucia Mendes Souza, Daniel Janies, John Gray, Erich Grotewold

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NOD/SCID mouse model of canine T-cell lymphoma with humoral hypercalcaemia of malignancy: cytokine gene expression profiling and in vivo bioluminescent imaging.

Lymphoma is a malignant neoplasm arising from B or T lymphocytes. In dogs, one-third of lymphomas are highly aggressive multicentric …

M V P Nadella, W C Kisseberth, K S Nadella, N K Thudi, D H Thamm, E A McNiel, A Yilmaz, K Boris-Lawrie, T J Rosol

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RNA helicase A interacts with divergent lymphotropic retroviruses and promotes translation of human T-cell leukemia virus type 1.

The 5’ untranslated region (UTR) of retroviruses contain structured replication motifs that impose barriers to efficient ribosome …

Cheryl Bolinger, Alper Yilmaz, Tiffiney Roberts Hartman, Melinda Butsch Kovacic, Soledad Fernandez, Jianxin Ye, Mary Forget, Patrick L Green, Kathleen Boris-Lawrie

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Coordinate enhancement of transgene transcription and translation in a lentiviral vector.

BACKGROUND: Coordinate enhancement of transgene transcription and translation would be a potent approach to significantly improve …

Alper Yilmaz, Soledad Fernandez, Michael D Lairmore, Kathleen Boris-Lawrie

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Retrovirus Translation Initiation: Issues and Hypotheses Derived from Study of HIV-1

Alper Yilmaz, Cheryl Bolinger, Kathleen Boris-Lawrie

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