Assist.Prof.Dr. Alper YILMAZ
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Plot one-liner generated data with gnuplot
In this post, I’ll demonstrate how to use gnuplot in a one-liner. We’ll use the pipe but unfortunately you cannot pipe raw …
Oct 16, 2010
2 min read
perl one-liner to pick random sequences from fasta file
In an earlier post we learned how to use Bio::SeqIO module to process fasta files with one-liner. Let’s do more with this …
Jul 15, 2010
1 min read
Way more practical one-liners with perl5i
perl5i project explains itself as “Perl 5 has a lot of warts, fix as much of it as possible in one pragma”. You can run …
Apr 26, 2010
1 min read
gnuplot boxerror, barchart with error bars
When I was trying to generate an image containing scatter-plot and a barchart with error bars, I got stuck with barchart part. There …
Apr 14, 2010
1 min read
Most used commands in history
Most of the “most used commands” approaches does not consider pipes and other complexities. This approach considers pipes, …
Apr 8, 2010
1 min read
Visualize Circos images with Seadragon
Circos is a very powerful tool to visualize different types of data (expression, homology, etc) in circular fashion. The software is …
Apr 2, 2010
1 min read
One line statistics
Let’s assume we have a file with five columns where first column is text and rest of the columns are numeric. How can we …
Apr 2, 2010
1 min read
View large images with Seadragon in personal pages
Maybe you already watched the video regarding Seadragon given at TED (sorry only low resolution version was available) I just …
Apr 1, 2010
1 min read
perl one-liner to process sequence files in stream
Need a practical way to process fasta files with Bio::SeqIO module ? Below code will print sequence id and sequence length with tab per …
Apr 1, 2010
1 min read
Top ten occurrences with perl one-liner
Mar 30, 2010
1 min read
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